Bioconductor Des

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 4 days ago by James W. MacDonald 65k • written 4 days ago by Alexandre • 0

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122

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Des DESeq2

updated 17 days ago by hemantcnaik • 0 • written 17 days ago by Sahar • 0

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214

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DESeq2 DEs

6 weeks ago feather-W • 0

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502

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DESeq2 des

updated 17 months ago by Michael Love 41k • written 17 months ago by Devin • 0

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562

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DES DESIGN

updated 19 months ago by Michael Love 41k • written 19 months ago by mike • 0

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609

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DESeq2 DES

updated 3.4 years ago by Michael Love 41k • written 3.4 years ago by heikki.sarin ▴ 10

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Comment: putting my own expression data in deseq2 by ATpoint ★ 4.1k

> directly from GEOquery I can tell you that GEOquery retrieves array data not appropriate for DESeq2. For anything else make your questi…

Comment: Assist me in determining whether the analysis process using the limma package ha by SSSJec • 0

Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…

Comment: Why p value inconsistent when using different number of pathway score? by Gordon Smyth 50k

Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by Chris • 0

Thank you! The resource I use may mispresent the requirement input of fgsea.

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by alserg ▴ 260

fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…

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Nominations for Bioconductor Awards 2024!

Answer: Improving the design matrices vignette in RNAseq123

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha

Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)

Awards • All

Popular Question to Matthew Ritchie ▴ 1000

Scholar to alserg ▴ 260