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DES
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0
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3
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359
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DESeq2 inconsistent fits depending on model design with interacting factors
des
DESeq2
written 5 months ago by
fedor.bezrukov
▴ 10
0
votes
1
reply
686
views
unreal negative log2fc values
DESeq2
des
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Atul K.
• 0
2
votes
9
replies
2.0k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
Alexandre
• 0
0
votes
1
reply
661
views
Bioinformatics student
Des
DESeq2
updated 22 months ago by
hemantcnaik
• 0 • written 22 months ago by
Sahar
• 0
2
votes
2
replies
837
views
With DESeq2 "Not full rank" Error with design
DESeq2
DEs
23 months ago
feather-W
• 0
0
votes
1
reply
952
views
Design structure
DESeq2
des
updated 3.2 years ago by
Michael Love
43k • written 3.3 years ago by
Devin
• 0
0
votes
1
reply
1.0k
views
Design Matrix Singularity Error
DES
DESIGN
updated 3.4 years ago by
Michael Love
43k • written 3.4 years ago by
mike
• 0
0
votes
1
reply
1.3k
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2
DES
updated 5.1 years ago by
Michael Love
43k • written 5.1 years ago by
heikki.sarin
▴ 10
8 results • Page
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Answer: Bulk RNAseq analysis for
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All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
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By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Answer: Bulk RNAseq analysis for
by
James W. MacDonald
68k
In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…
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I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…
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mudasarnaeem2020
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Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
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Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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