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DEs
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396
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DESeq2 inconsistent fits depending on model design with interacting factors
des
DESeq2
written 6 months ago by
fedor.bezrukov
▴ 10
0
votes
1
reply
689
views
unreal negative log2fc values
DESeq2
des
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
Atul K.
• 0
2
votes
9
replies
2.1k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
Alexandre
• 0
0
votes
1
reply
661
views
Bioinformatics student
Des
DESeq2
updated 22 months ago by
hemantcnaik
• 0 • written 22 months ago by
Sahar
• 0
2
votes
2
replies
844
views
With DESeq2 "Not full rank" Error with design
DESeq2
DEs
23 months ago
feather-W
• 0
0
votes
1
reply
955
views
Design structure
DESeq2
des
updated 3.3 years ago by
Michael Love
43k • written 3.3 years ago by
Devin
• 0
0
votes
1
reply
1.0k
views
Design Matrix Singularity Error
DES
DESIGN
updated 3.4 years ago by
Michael Love
43k • written 3.4 years ago by
mike
• 0
0
votes
1
reply
1.4k
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2
DES
updated 5.2 years ago by
Michael Love
43k • written 5.2 years ago by
heikki.sarin
▴ 10
8 results • Page
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Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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