Bioconductor Des

Showing : des • reset

votes

replies

463

views

DESeq2 RUVSeq RUVseq BatchEffect DES

updated 4 weeks ago by James W. MacDonald 66k • written 4 weeks ago by Alexandre • 0

votes

157

views

Des DESeq2

updated 6 weeks ago by hemantcnaik • 0 • written 6 weeks ago by Sahar • 0

votes

replies

251

views

DESeq2 DEs

10 weeks ago feather-W • 0

votes

527

views

DESeq2 des

updated 18 months ago by Michael Love 42k • written 18 months ago by Devin • 0

votes

581

views

DES DESIGN

updated 20 months ago by Michael Love 42k • written 20 months ago by mike • 0

votes

629

views

DESeq2 DES

updated 3.4 years ago by Michael Love 42k • written 3.4 years ago by heikki.sarin ▴ 10

6 results • Page 1 of 1

Recent ...

Replies

Answer: Counter-directional LFC shrinkage by Michael Love 42k

It's not just the average count but also the dispersion that affects apeglm. You can try ashr for another type of shrinkage.

Comment: Error in gseDO function by Javier • 0

Thank you for your answer! The thing is I'm working with 12 genes (I did also some targeted cholesterol efflux-related genes, but for sha…

Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by Ali Osman • 0

Thanks for your response and suggestions @atpoint ! I think implementation of the function is not a problem (I already have some options an…

Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU by Marek Gierlinski ▴ 30

Two years on and the issue is still there. Thank you Arthur for the solution!

Comment: Cannot install oligo on Fedora by mbassal • 0

so whats the solution for this error?

Votes

A: DESeq2: add annotations (from data frame) to DESeqDataSet

Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

Awards • All