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deseq2
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0
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6
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599
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Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
6 days ago • updated 3 days ago
Ken C
• 0
2
votes
4
replies
217
views
DESeq2- Mysterious interaction suppresses DEGs
DESeq2
PCAplot
RNA-Seq
DesignModel
updated 3 days ago by
Michael Love
42k • written 6 days ago by
shaunpeterson
• 0
1
vote
3
replies
143
views
LRT, more than two conditions and pairwise comparisons
DESeq2
updated 3 days ago by
James W. MacDonald
66k • written 4 days ago by
boczniak767
▴ 720
1
vote
8
replies
141
views
Slightly different count plots from R and spreadsheet
DESeq2
ggplot2
1 day ago
boczniak767
▴ 720
0
votes
2
replies
46
views
Volcano plot of scRNA-seq data not "centered"
DESeq2
updated 6 hours ago by
Michael Love
42k • written 7 hours ago by
tjl
• 0
5 results • Page
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Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
jovel_juan
▴ 30
enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
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