Bioconductor Diffbind

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269

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DiffBind DESeq2 ATACSeq

4 weeks ago • updated 29 days ago lonn • 0

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375

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DiffBind

updated 7 days ago by Ziliang • 0 • written 18 days ago by Ian D. ▴ 70

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171

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DiffBind

updated 23 days ago by ATpoint ★ 4.1k • written 24 days ago by Shloka • 0

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157

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DiffBind ChIPSeqData DESeq2

updated 19 days ago by Michael Love 42k • written 19 days ago by marcusn • 0

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DiffBind ChIPSeqData

12 days ago Dinesh • 0

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DiffBind

4 days ago zzrammal • 0

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DiffBind macs2 chipseq

16 days ago yvonneh • 0

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120

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DiffBind

15 days ago Henry ▴ 10

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DiffBind

16 days ago Ian D. ▴ 70

9 results • Page 1 of 1

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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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