Bioconductor Diffbind

Showing : diffbind • reset

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DiffBind

4 days ago zzrammal • 0

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DiffBind ChIPSeqData

12 days ago Dinesh • 0

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120

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DiffBind

15 days ago Henry ▴ 10

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DiffBind macs2 chipseq

17 days ago yvonneh • 0

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DiffBind

17 days ago Ian D. ▴ 70

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375

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DiffBind

updated 7 days ago by Ziliang • 0 • written 18 days ago by Ian D. ▴ 70

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157

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DiffBind ChIPSeqData DESeq2

updated 19 days ago by Michael Love 42k • written 19 days ago by marcusn • 0

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171

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DiffBind

updated 23 days ago by ATpoint ★ 4.1k • written 25 days ago by Shloka • 0

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269

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DiffBind DESeq2 ATACSeq

4 weeks ago • updated 29 days ago lonn • 0

9 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…

Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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