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diffbind
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More regions in union when increasing DBA$config$mergeOverlap
DiffBind
updated 9 days ago by
Ziliang
• 0 • written 19 days ago by
Ian D.
▴ 70
1
vote
1
reply
159
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 20 days ago by
Michael Love
42k • written 20 days ago by
marcusn
• 0
0
votes
1
reply
175
views
ATACseq merge peaks
DiffBind
updated 24 days ago by
ATpoint
★ 4.1k • written 26 days ago by
Shloka
• 0
0
votes
0
replies
100
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
14 days ago
Dinesh
• 0
0
votes
0
replies
97
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
18 days ago
yvonneh
• 0
0
votes
0
replies
45
views
Difference in Contrast in DiffBind
DiffBind
5 days ago
zzrammal
• 0
0
votes
0
replies
89
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
18 days ago
Ian D.
▴ 70
0
votes
0
replies
124
views
dba.plotProfile() plotting and interpretation
DiffBind
17 days ago
Henry
▴ 10
8 results • Page
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Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
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