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diffbind
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More regions in union when increasing DBA$config$mergeOverlap
DiffBind
updated 8 days ago by
Ziliang
• 0 • written 19 days ago by
Ian D.
▴ 70
0
votes
1
reply
174
views
ATACseq merge peaks
DiffBind
updated 24 days ago by
ATpoint
★ 4.1k • written 26 days ago by
Shloka
• 0
1
vote
1
reply
158
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 20 days ago by
Michael Love
42k • written 20 days ago by
marcusn
• 0
0
votes
0
replies
124
views
dba.plotProfile() plotting and interpretation
DiffBind
17 days ago
Henry
▴ 10
0
votes
0
replies
99
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
13 days ago
Dinesh
• 0
0
votes
0
replies
95
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
18 days ago
yvonneh
• 0
0
votes
0
replies
89
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
18 days ago
Ian D.
▴ 70
0
votes
0
replies
44
views
Difference in Contrast in DiffBind
DiffBind
5 days ago
zzrammal
• 0
8 results • Page
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Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm
by
Michael Love
42k
You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Got you. Thanks again for your comments.
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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