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Answer: Crossover design with limma
by
Gordon Smyth
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Your experiment is somewhat more elaborate than a classical crossover design because of the period-specific baseline controls. The analyses…
Answer: Differential Expression Genes as Independent Variables
by
Gordon Smyth
52k
Sorry, your question doesn't make sense to me. There are tens of thousands of genes and you can't run a mixed model analysis with one depen…
Comment: What type of counts data to import for performing Isoform analysis in edgeR
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Gordon Smyth
52k
ATPoint and I have both already told you that you cannot use any of the output files from nf-core, and why that is so. I explained to you t…
Comment: What type of counts data to import for performing Isoform analysis in edgeR
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mohammedtoufiq91
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@gordonsmyth
I am exploring workflows for differential transcript expression analysis and have been using the nfcore rnasplice pipeline, w…
Answer: What type of counts data to import for performing Isoform analysis in edgeR
by
Gordon Smyth
52k
I haven't used nf-core but, from browsing through their documentation, they didn't seem to have any pipeline for differential transcript ex…
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