Bioconductor Drugvsdisease

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drugvsdisease drug disease

updated 8.2 years ago by saezrodriguez • 0 • written 8.3 years ago by bioinformatics ▴ 20

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rnaseq drugvsdisease gcmap gcmapweb

updated 8.4 years ago by saezrodriguez • 0 • written 8.4 years ago by bioinformatics ▴ 20

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systemsbiology network analysis drugvsdisease Job

9.3 years ago jing.tang • 0

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CellNOptR DrugVsDisease CellNOptR DrugVsDisease

12.8 years ago Emanuel Gonçalves ▴ 10

4 results • Page 1 of 1

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Comment: European Bioconductor Conference 2023 planning by magnificent.mollusk.nvtp • 0

I once co-organized a genomics meetup where logistics, speaker balance, and outreach felt like solving a live [connections game](https://co…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

Comment: voomLmFit fitted log-CPM values by Lina ▴ 10

Is the output from fitted(v) in the log2 CPM scale? or CPM scale?

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A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

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