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dmrcate enrichment analysis epic array goregion missmethyl

updated 19 months ago by Jovana Maksimovic ▴ 10 • written 2.6 years ago by yoursbassanio ▴ 10

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champ bioconductor methyaltion epic array

updated 4.0 years ago by godai987654 • 0 • written 4.1 years ago by erinkello • 0

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Comment: Which input file is used for DGEList in EgdeR? by Michael Love 39k

Does it output Salmon files (directories with `quant.sf` in them)? That would be the easiest. These files you have above are processed and…

Answer: Log2Fold change interpretation - Continuous predictor variable by Michael Love 39k

It can be more sensitive than binary versions, this has been written about in statistical literature. But most of all I would encourage …

Comment: DESeq2 and heatmap for multiple comparisons by artem.vorobyev • 0

this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…

Comment: athPkgBuilder data source :missing probesets by nicklesteele532 • 0

> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…

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Comment: recount 3 protect read length metadata

C: Batch correction in DESeq2

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