Showing : missmethyl • reset
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Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 10 months ago by ▴ 10 • written 22 months ago by ▴ 10
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1
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252
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missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 10 months ago by ▴ 10 • written 20 months ago by ▴ 10
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2
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1.2k
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Minfi read.metharray.sheet error
minfi methylation dataimport minfidata missmethyl
updated 3.7 years ago by 59k • written 3.7 years ago by ▴ 20
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419
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missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
3.7 years ago peter.fransquet • 0
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405
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missmethyl gsameth outputs matrix instead of dataframe
missmethyl gsameth
3.9 years ago owen.whitley • 0
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785
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Test for differential variability with missMethyl (DiffVar) using block design
missmethyl diffvar design matrix limma block
updated 4.0 years ago by ▴ 50 • written 4.9 years ago by ▴ 180
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454
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which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
4.0 years ago RC • 0
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404
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MissMethyl: Sample size and control probes
missmethyl RUV control probes
4.1 years ago Taub, Margaret ▴ 10
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2
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811
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prior.prob has opposite effects in goana and kegga?
limma missMethyl gometh goana kegga
updated 4.9 years ago by 45k • written 5.0 years ago by ★ 2.0k
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3
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743
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Details of gene names in DE
missmethyl
updated 5.1 years ago by 59k • written 5.1 years ago by • 0
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1
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754
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missMethyl package: gsameth bias plots
missmethyl plots bias package
updated 5.2 years ago by ▴ 10 • written 5.2 years ago by • 0
1
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2
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823
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Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 5.8 years ago by 59k • written 5.8 years ago by • 0
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3
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2.2k
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Pathway analysis of differentially methylated CpGs
limma missmethyl
6.1 years ago philipp24 ▴ 30
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2.4k
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missMethyl: Gene ontology analysis
missMethyl
6.2 years ago • updated 6.1 years ago philipp24 ▴ 30
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809
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Pathway analysis of differentially methylated CpGs
limma missmethyl
6.1 years ago philipp24 ▴ 30
15 results • Page 1 of 1
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Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Comment: Error using read.ilmn and neqc by Gordon Smyth 45k
I edited the title of your question to be more specific.
Answer: Using limma to read Illumina HT-12 v4 data by Gordon Smyth 45k
It seems clear that you haven't exported the correct intensity data from GenomeStudio, and I think you recognize that yourself in your ques…
Answer: performing the differential binding in ChIP-seq by etiennedanis • 0
DiffBind https://bioconductor.org/packages/release/bioc/html/DiffBind.html
Votes
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
C: DESeq2 - Differences between plotCounts and normalized counts
C: DESEq2 - Change reference level change "Contrasts" results
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Scholar to James W. MacDonald 59k
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Scholar to SamGG ▴ 270
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