Showing : missmethyl • reset
0
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2
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378
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DMPs enrichment for MOUSE DNA methylation array
minfi mCSEA missme missMethyl
updated 7 weeks ago by • 0 • written 8 weeks ago by • 0
1
vote
3
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1.3k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
7 months ago • updated 23 days ago s.malik • 0
0
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1
reply
710
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dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 14 months ago by ▴ 200 • written 14 months ago by • 0
0
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2
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750
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ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 6 months ago by • 0 • written 17 months ago by • 0
1
vote
1
reply
738
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 17 months ago by ▴ 40 • written 17 months ago by • 0
0
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1
reply
641
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topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
17 months ago Grace • 0
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0
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480
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goMeth
missMethyl
19 months ago anmolanp ▴ 10
2
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6
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1.2k
views
No enriched GO terms CpGs
DNAMethylation missMethyl
updated 19 months ago by ▴ 40 • written 19 months ago by • 0
2
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3
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1.3k
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GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 21 months ago by ▴ 40 • written 21 months ago by • 0
0
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6
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1.5k
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Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 3.3 years ago by ▴ 20 • written 4.2 years ago by ▴ 10
0
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1
reply
995
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missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 3.3 years ago by ▴ 20 • written 4.1 years ago by ▴ 10
1
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2
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2.2k
views
Minfi read.metharray.sheet error
minfi methylation dataimport minfidata missmethyl
updated 6.1 years ago by 67k • written 6.1 years ago by ▴ 20
0
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0
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1.0k
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
6.1 years ago peter.fransquet • 0
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0
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966
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missmethyl gsameth outputs matrix instead of dataframe
missmethyl gsameth
6.3 years ago owen.whitley ▴ 10
0
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1
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1.5k
views
Test for differential variability with missMethyl (DiffVar) using block design
missmethyl diffvar design matrix limma block
updated 6.4 years ago by ▴ 50 • written 7.3 years ago by ▴ 190
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0
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1.0k
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which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.4 years ago RC • 0
0
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0
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1.1k
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MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.4 years ago Taub, Margaret ▴ 10
0
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2
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1.6k
views
prior.prob has opposite effects in goana and kegga?
limma missMethyl gometh goana kegga
updated 7.3 years ago by 51k • written 7.4 years ago by ★ 2.0k
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3
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1.4k
views
Details of gene names in DE
missmethyl
updated 7.5 years ago by 67k • written 7.5 years ago by • 0
0
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1
reply
1.4k
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missMethyl package: gsameth bias plots
missmethyl plots bias package
updated 7.6 years ago by ▴ 40 • written 7.6 years ago by • 0
1
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2
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1.6k
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 8.2 years ago by 67k • written 8.2 years ago by • 0
1
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3
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3.2k
views
Pathway analysis of differentially methylated CpGs
limma missmethyl
8.5 years ago philipp24 ▴ 30
3
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3
replies
3.8k
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missMethyl: Gene ontology analysis
missMethyl
8.6 years ago • updated 8.5 years ago philipp24 ▴ 30
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0
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1.3k
views
Pathway analysis of differentially methylated CpGs
limma missmethyl
8.5 years ago philipp24 ▴ 30
24 results • Page 1 of 1
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Answer: How to subset voomLmFit (MArrayLM) object? by Gordon Smyth 51k
Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…
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Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …
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I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…
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I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…
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That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …
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Answer: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable
Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical
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