Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
missmethyl
•
reset
0
votes
1
reply
109
views
ageData (minfi pipeline)
ageData
missMethyl
differentialvariability
minfi
updated 24 days ago by
Basti
▴ 720 • written 24 days ago by
Saanchi
• 0
1
vote
1
reply
139
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis
topGO
missMethyl
MethylationArrayData
MethylationArray
updated 5 weeks ago by
belinda.phipson
▴ 40 • written 5 weeks ago by
Grace
• 0
0
votes
1
reply
119
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
5 weeks ago
Grace
• 0
0
votes
0
replies
76
views
goMeth
missMethyl
11 weeks ago
anmolanp
▴ 10
2
votes
6
replies
291
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 3 months ago by
belinda.phipson
▴ 40 • written 3 months ago by
Joana
• 0
2
votes
3
replies
314
views
GSEA for paired methylation data
missMethyl
GSEA
minfi
methylGSA
updated 5 months ago by
belinda.phipson
▴ 40 • written 5 months ago by
Lukas
• 0
0
votes
6
replies
869
views
Find genes in pathways enrichment
dmrcate
enrichment analysis
epic array
goregion
missmethyl
updated 23 months ago by
Jovana Maksimovic
▴ 10 • written 2.9 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
483
views
missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 23 months ago by
Jovana Maksimovic
▴ 10 • written 2.8 years ago by
stewart999
▴ 10
1
vote
2
replies
1.6k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 4.7 years ago by
James W. MacDonald
63k • written 4.7 years ago by
moldach
▴ 20
0
votes
0
replies
623
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
4.8 years ago
peter.fransquet
• 0
0
votes
0
replies
576
views
missmethyl gsameth outputs matrix instead of dataframe
missmethyl
gsameth
4.9 years ago
owen.whitley
▴ 10
0
votes
1
reply
987
views
Test for differential variability with missMethyl (DiffVar) using block design
missmethyl
diffvar
design matrix
limma
block
updated 5.0 years ago by
lhuang7
▴ 50 • written 6.0 years ago by
Simone
▴ 180
0
votes
0
replies
640
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
5.1 years ago
RC
• 0
0
votes
0
replies
610
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
5.1 years ago
Taub, Margaret
▴ 10
0
votes
2
replies
1.0k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 5.9 years ago by
Gordon Smyth
47k • written 6.1 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
972
views
Details of gene names in DE
missmethyl
updated 6.2 years ago by
James W. MacDonald
63k • written 6.2 years ago by
r.clifford
• 0
0
votes
1
reply
975
views
missMethyl package: gsameth bias plots
missmethyl
plots
bias
package
updated 6.3 years ago by
belinda.phipson
▴ 40 • written 6.3 years ago by
evani.radiya.dixit
• 0
1
vote
2
replies
1.1k
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology
GO
overrepresentation analysis
missmethyl
gostats
updated 6.8 years ago by
James W. MacDonald
63k • written 6.8 years ago by
graggsd
• 0
1
vote
3
replies
2.5k
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
7.2 years ago
philipp24
▴ 30
3
votes
3
replies
2.9k
views
missMethyl: Gene ontology analysis
missMethyl
7.2 years ago
philipp24
▴ 30
0
votes
0
replies
951
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
7.2 years ago
philipp24
▴ 30
21 results • Page
1 of 1
Recent ...
Replies
Answer: multiple filters in biomaRt
by
RuBBiT0
▴ 10
First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…
Comment: Diffbind "No genome detected"
by
kyliecode
• 0
Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…
Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio)
by
Michael Love
40k
I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…
Comment: TCGAbiolinks cannot find bcr_patient_barcode
by
Habil Zare
▴ 170
I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!
Answer: error in ChAMP loading file
by
jenniferbrowngates
• 0
I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …
Votes
Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
Comment: Error: biomaRt has encountered an unexpected server error.
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
Awards
• All
Scholar
to
Tiago C. Silva
▴ 270
Popular Question
to
reba.duncan
• 0
Popular Question
to
tntntntntn
▴ 10
Popular Question
to
rodrigo.duarte88
▴ 30
Scholar
to
Rory Stark
★ 4.9k
Locations
• All
Peru,
3 minutes ago
United States,
9 minutes ago
United States,
31 minutes ago
United States,
33 minutes ago
Germany,
41 minutes ago
Traffic: 379 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6