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exome
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edgeR for looking at differences in coverage?
edgeR
exome
updated 3.2 years ago by
Aaron Lun
★ 27k • written 3.2 years ago by
am3
• 0
0
votes
1
reply
715
views
Whole exomes: number of genes, polymorphism
whole exome sequence
R
bioconductor
exome
5.4 years ago • updated 5.3 years ago
bioinf
▴ 10
3
votes
6
replies
995
views
Whole exome: BAM statistics and other relevant information
rsamtools
whole exome sequence
bam
exome
R
5.4 years ago
bioinf
▴ 10
0
votes
0
replies
715
views
any ideas on a workflow for exome seq data analysis with R?
exome
dnaseq
WES
6.1 years ago
arvand.akbari
• 0
0
votes
1
reply
909
views
ExomeDepth Package Error Messages
cnv
exome
6.3 years ago
Bio152
▴ 150
5 results • Page
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Comment: How to get DESeq2 results for a list of genes
by
ATpoint
★ 1.3k
That's a problem related to your lack of R basics, neither DESeq2 or Bioconductor software/technical problem. Please learn R basics first. …
Comment: How to get DESeq2 results for a list of genes
by
Lucía
▴ 10
Hi, thank you! Unfortunately that doesn't work. The first option gives me this error: ``` # Extracting for list my_genes <- read.delim("di…
Comment: Error
by
ATpoint
★ 1.3k
https://github.com/conda-forge/rpy2-feedstock/issues/1
Comment: Error: BiocParallel errors
by
lxl13260684135
• 0
I came across the same problem, have you solved it?
Answer: How to get DESeq2 results for a list of genes
by
ATpoint
★ 1.3k
Standard rules apply for filtering in R. If the genes are the rownames of the results object `res` then: res[my_ges,] or if the colu…
Votes
C: DESEQ2 'results' filter by value for multiple conditions (contrast off?)
C: DESEQ2 'results' filter by value for multiple conditions (contrast off?)
How to get DESeq2 results for a list of genes
Answer: setting sizeFactors from scran :: caculateSumFactors.
Answer: ComplexHeatmap: Change font size of annotation axis values
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