Showing : Pathways • reset
1
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4
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292
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pathview - multiple states
pathview Pathways KEGG
10 days ago • updated 9 days ago Philippine • 0
3
votes
1
reply
973
views
Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 5 months ago by ★ 4.1k • written 5 months ago by ▴ 10
1
vote
9
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1.5k
views
Most enriched pathway is not expressed when modifying universe parameter
DESeq2 clusterProfiler Pathways RNASeq org.Mm.eg.db
updated 5 months ago by 67k • written 6 months ago by ▴ 10
2
votes
3
replies
875
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How many of my genes from my gene list are in each KEGG pathway?
Pathways clusterProfiler gseKEGG KEGG
updated 4 weeks ago by • 0 • written 8 months ago by • 0
0
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11
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2.5k
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globaltest question
Pathways probe affy Pathways probe affy
written 18.3 years ago by ▴ 30
0
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0
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603
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Job: Postdoc for computational biology on cancer omics data analysis at Liang lab of Wistar Institute, Philadelphia, US
omics cancerdata Pathways
11 months ago omicsresearch • 0
0
votes
1
reply
687
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topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
19 months ago Grace • 0
0
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0
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704
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Changing pathway names in pathway analysis
pathways Pathways
22 months ago Katharina • 0
0
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0
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833
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Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
2.1 years ago whduke • 0
0
votes
0
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979
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Pathway Analysis using GAGE
gage RNASeq gageData Pathways
2.7 years ago OST • 0
1
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2
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1.0k
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Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
2.8 years ago • updated 2.7 years ago m.glymenaki • 0
0
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6
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4.5k
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extracting the KEGG pathway for a set of genes
Pathways KEGG
3.4 years ago Bogdan ▴ 670
0
votes
4
replies
5.9k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
updated 3.7 years ago by ▴ 360 • written 3.7 years ago by ▴ 10
1
vote
1
reply
1.3k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
3.8 years ago Luo Weijun ★ 1.6k
2
votes
0
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1.2k
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.9 years ago Ben ▴ 50
2
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2
replies
1.4k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 4.0 years ago by 67k • written 4.0 years ago by • 0
2
votes
1
reply
2.6k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea ssgsea gsva pathways
updated 4.4 years ago by ★ 3.4k • written 4.4 years ago by ▴ 50
0
votes
1
reply
2.1k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
0
votes
4
replies
1.2k
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Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
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0
replies
970
views
plotting Signalling Pathways using SPIA
SPIA functional-analysis Pathways KEGG
4.7 years ago Assa Yeroslaviz ★ 1.5k
2
votes
2
replies
1.2k
views
Help for Research Proposal
drug development pathways bioinformatics
updated 6.0 years ago by ★ 13k • written 6.0 years ago by • 0
0
votes
0
replies
1.1k
views
Pathview input error: non-numeric variable in data frame
pathview kegg pathways package
6.2 years ago anc.informatics • 0
0
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0
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781
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Interactive metabolic pathway
pathways
6.3 years ago pritim2k6 • 0
0
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1
reply
1.2k
views
Protein pathway analysis -- Classify, organize, and cluster a list of proteins / discovering relations between a set of proteins and linking them to …
protein disease pathway analysis pathways
6.4 years ago ረ • 0
0
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0
replies
909
views
Could not find pathways in HSA gmt
pathways gmt
6.5 years ago flalix • 0
0
votes
5
replies
6.6k
views
clusterProfiler: exclude pathways and add gene names to cnetplot
clusterprofiler pathway analysis pathways
updated 2.1 years ago by • 0 • written 6.6 years ago by ▴ 20
2
votes
4
replies
2.6k
views
ReactomePA / Reactome: Extraction of genes within a term
pathways reactomepa functional annotation
updated 6.6 years ago by ★ 1.2k • written 6.6 years ago by • 0
0
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0
replies
1.2k
views
Pathview web - unable to map transcriptomic data
pathways high-throughput transcriptomics nonmodel species
6.6 years ago monteiro • 0
0
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0
replies
1.1k
views
igraph PoTRA error
graph pathways igraph
6.7 years ago genomic8328 ▴ 10
2
votes
1
reply
2.1k
views
Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
updated 6.9 years ago by • 0 • written 11.2 years ago by ★ 1.6k
0
votes
0
replies
1.4k
views
Two questions about pathifier package
pathways statistics microarray
6.9 years ago arronar • 0
1
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0
replies
1.6k
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
7.1 years ago bulfin.triona ▴ 10
0
votes
1
reply
2.1k
views
GAGE or GSEABase using expression data and pathway.gmt file for mouse
R GSEA GAGE pathways
updated 7.6 years ago by ★ 1.6k • written 7.6 years ago by • 0
0
votes
1
reply
2.3k
views
Pathview: visualization of data
pathways
updated 7.7 years ago by ★ 1.6k • written 7.7 years ago by • 0
0
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0
replies
1.4k
views
Pathway analysis for diffrential express gene
pathways gage annotation gostats
7.8 years ago avinash gupta ▴ 130
0
votes
0
replies
1.5k
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Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job phd R pathways Job
8.0 years ago Frank Kramer ▴ 60
0
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6
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1.8k
views
Is reactome.db still updated?
reactome.db annotation pathways
8.2 years ago Guido Hooiveld ★ 4.1k
0
votes
4
replies
2.2k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 8.2 years ago by ▴ 40 • written 8.2 years ago by • 0
2
votes
0
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1.5k
views
Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job job phd R pathways Job
8.2 years ago Frank Kramer ▴ 60
0
votes
2
replies
3.0k
views
WGCNA - Using real data for tutorial III
pathways wgcna network rna-seq
8.9 years ago hywel.williams • 0
2
votes
3
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5.4k
views
Pathview None of the genes or compounds mapped to the pathway
pathview pathways KEGG empty map
updated 3.4 years ago by • 0 • written 9.0 years ago by ▴ 20
2
votes
1
reply
1.3k
views
Problem with data not found using pathview package
pathways
updated 9.6 years ago by 67k • written 9.6 years ago by • 0
8
votes
14
replies
4.3k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 9.7 years ago by ▴ 150 • written 10.1 years ago by ★ 1.2k
1
vote
15
replies
3.9k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 9.7 years ago by ▴ 150 • written 10.1 years ago by ★ 2.1k
0
votes
2
replies
2.0k
views
retrieve kegg pathway abundances from gage analysis
gage pathways kegg
updated 9.8 years ago by ★ 1.6k • written 9.8 years ago by ▴ 100
0
votes
13
replies
6.4k
views
gage pathways enrichment analysis
gage pathways kegg
updated 10.0 years ago by ★ 1.6k • written 10.1 years ago by ▴ 100
0
votes
2
replies
4.9k
views
Pathway enrichment in bacteria metagenomes
pathways metagenomics
updated 10.1 years ago by ★ 1.6k • written 10.1 years ago by ▴ 100
0
votes
0
replies
2.4k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
10.3 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.9k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
10.3 years ago Guest User ★ 13k
0
votes
0
replies
1.7k
views
Error in keggPathwayGraphs when updateCache = TRUE
Pathways ROntoTools Pathways ROntoTools
10.4 years ago Guest User ★ 13k
50 results • Page 1 of 1
Recent ...
Replies
Answer: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library by María Calvo • 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Answer: Need new version : tx2gene.gencode.v47.csv by Guido Hooiveld ★ 4.1k
Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
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