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gaps
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how to get protein sequence similarity and gaps % using Biostrings
sequence-similarity
gaps
homology
Biostrings
pairwise-alignment
2.4 years ago
biong
• 0
0
votes
0
replies
1.0k
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fastseg package and gaps in genome
fastseg
reference genome
gaps
8.3 years ago
epic4benjis78
• 0
1
vote
9
replies
1.9k
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Big data for IRanges: Combining reduce and gaps with dplyr functions
r
iranges
reduce
gaps
9.3 years ago
pesquivel
• 0
0
votes
0
replies
1.4k
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Big data for IRanges: Combining reduce and gaps with dplyr functions
r
iranges
reduce
gaps
9.3 years ago
pesquivel
• 0
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Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column
by
Erika
• 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping
by
James W. MacDonald
68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data
by
silickas
• 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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