Showing : iranges • reset
3
votes
4
replies
639
views
Error with importFrom and GenomicRanges in NAMESPACE
GenomicRanges IRanges
updated 8 months ago by 16k • written 8 months ago by • 0
0
votes
0
replies
322
views
adding peptides to a multiple sequence alignment
msa IRanges Biostrings
10 months ago Mario Dejung • 0
1
vote
2
replies
896
views
how to plot iranges in r version 4.0.0?
IRanges
updated 12 months ago by ▴ 10 • written 3.4 years ago by • 0
2
votes
1
reply
1.3k
views
Removing metadata rows containing NA values in GRanges
IRanges GRanges NA
updated 14 months ago by ★ 3.6k • written 14 months ago by • 0
1
vote
2
replies
1.0k
views
IRanges vignette code comment
iranges
updated 17 months ago by • 0 • written 8.8 years ago by 41k
0
votes
3
replies
517
views
Extracting values from out-of-bounds Rle Views
IRanges XVector AtomicList
written 17 months ago by ▴ 20
1
vote
2
replies
1.2k
views
Extracting Score/Coverage From GRange Object
IRanges rtracklayer GenomicRanges
19 months ago vanbelj ▴ 20
2
votes
3
replies
878
views
slidingIRanges in IRanges ... odd behavior
IRanges
updated 10 months ago by • 0 • written 2.1 years ago by ▴ 20
1
vote
2
replies
776
views
How to apply a function to a RleViesList object?
Views IRanges GRanges RleList
updated 2.2 years ago by ★ 6.2k • written 2.2 years ago by ★ 1.5k
2
votes
3
replies
895
views
how to get genomic coordinates from an MIndex object
IRanges MIndex
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 110
1
vote
4
replies
1.2k
views
IRanges::findOverlapPairs cannot take inputs if they are too large
IRanges GenomicRanges
2.6 years ago Yixin • 0
1
vote
1
reply
688
views
mean coverage plot of IRanges / Granges object
IRanges
updated 2.7 years ago by 64k • written 2.7 years ago by • 0
1
vote
2
replies
982
views
Question about nearest function in R package IRanges
nearest IRanges
updated 2.8 years ago by ★ 4.3k • written 2.8 years ago by • 0
2
votes
3
replies
840
views
Recycling a DNAStringSet over an IRangesList in extractAt()
Biostrings IRanges
3.0 years ago Nicholas Cooley • 0
1
vote
1
reply
1.0k
views
GenomicRanges equivalent to bedtools cluster
IRanges GenomicRanges
updated 3.0 years ago by 64k • written 3.0 years ago by • 0
0
votes
1
reply
729
views
need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR granges iranges
updated 3.1 years ago by ▴ 150 • written 3.5 years ago by • 0
0
votes
1
reply
844
views
How can i get repetitive elements genomic ranges in human genome?
repetitive elements IRanges GenomicRanges BSgenome
updated 3.3 years ago by 64k • written 3.3 years ago by ▴ 50
0
votes
1
reply
697
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
updated 3.5 years ago by ★ 28k • written 3.5 years ago by • 0
8
votes
10
replies
1.6k
views
Compare ranges from two GRanges and check if the ranges from the first GRanges is contained in another.
GRanges IRanges
updated 3.5 years ago by 64k • written 3.5 years ago by ▴ 50
4
votes
6
replies
956
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr IRanges aggregateTagClusters
3.6 years ago mirkocelii ▴ 40
0
votes
0
replies
777
views
No methods found in package Biobase for request: read.AnnotatedDataFrame
software error biobase Iranges ArrayExpressHTS
3.7 years ago Ed Siefker ▴ 230
8
votes
12
replies
5.1k
views
Intergenic coordinates with Genomic Feaures
genomicranges genomicfeatures iranges
updated 16 months ago by • 0 • written 8.7 years ago by ▴ 20
0
votes
0
replies
679
views
Is the ballgownrsem function still supported?
ballgown rsem iranges
4.0 years ago • updated 3.9 years ago YH • 0
0
votes
4
replies
1.4k
views
IRanges: solving row 5: range cannot be determined from the supplied arguments (too many NAs)
IRanges rtracklayer
updated 4.1 years ago by 64k • written 4.1 years ago by ▴ 30
0
votes
0
replies
619
views
DMDeepm6A: solve_user_SEW0", start, end, width, PACKAGE = "IRanges
rtracklayer IRanges DMDeepm6A
4.1 years ago jovel_juan ▴ 30
0
votes
1
reply
2.2k
views
Error in IRanges, In range 1: 'end' must be >= 'start' - 1.: .Call2(\"solve_user_SEW0\", start, end, width, PACKAGE = \"IRanges\")"
Genomicranges IRanges
updated 4.1 years ago by 64k • written 4.1 years ago by • 0
0
votes
7
replies
1.4k
views
Best way to subset one IRanges by list of IRanges
iranges
4.2 years ago Robert M. Flight ▴ 280
1
vote
3
replies
1.3k
views
Correct way to split and unsplit a DataFrame
s4vectors iranges
updated 4.3 years ago by 11k • written 4.3 years ago by ▴ 90
0
votes
1
reply
633
views
Diffbind problems with negative widths in IRanges and chromosome ranges after dba.report
diffbind IRanges
updated 4.3 years ago by ★ 5.1k • written 4.3 years ago by • 0
0
votes
1
reply
722
views
Annotating protein sequences
Protein iranges sequencing
4.7 years ago ieuangw • 0
2
votes
2
replies
1.7k
views
Error in installation of scran
S4Vectors IRanges XVector GenomicRanges scran
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
4
votes
2
replies
937
views
Speed efficient way to select the n-th element from GRangsList
R GenomicRanges IRanges
5.0 years ago foehn ▴ 100
5
votes
8
replies
8.2k
views
Non overlapping granges (or opposite of subsetByOverlaps)
granges genomicranges iranges subsetByOverlaps
updated 21 months ago by • 0 • written 8.2 years ago by ▴ 50
2
votes
1
reply
958
views
Bug in follow and precede
software error genomicranges iranges
updated 5.0 years ago by ★ 6.8k • written 5.0 years ago by • 0
0
votes
3
replies
951
views
GenomicRanges based on indices or more conditions, and add column from match
genomicranges iranges findoverlaps
5.1 years ago francesca casalino ▴ 50
3
votes
3
replies
1.2k
views
Gaia results including negative widths
gaia genomicranges iranges
updated 5.3 years ago by ▴ 40 • written 5.3 years ago by ▴ 10
2
votes
1
reply
762
views
IRanges seqselect and subsetByRanges
Iranges defunct
updated 5.3 years ago by 11k • written 5.3 years ago by • 0
0
votes
15
replies
1.7k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor iranges s4vectors xvector r 3.3.2
updated 5.4 years ago by ▴ 10 • written 5.4 years ago by • 0
0
votes
0
replies
843
views
IRanges error while input rsem data into ballgown : .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges")
ballgown rsem iranges
5.4 years ago kicheol.kim • 0
1
vote
0
replies
1.9k
views
IRanges error while input rsem data into ballgown : .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges")
ballgown rsem iranges
5.4 years ago kicheol.kim • 0
0
votes
1
reply
950
views
TEQC - new version Bioc - problem with IRanges
teqc iranges
updated 5.4 years ago by ▴ 10 • written 5.5 years ago by • 0
0
votes
0
replies
835
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges s4vectors rle rlelist
5.4 years ago endrebak85 ▴ 30
2
votes
2
replies
1.8k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
5.5 years ago GENOMIC_region • 0
0
votes
1
reply
806
views
CNRegions gives error in IRanges Package
CNregions iranges iClusterPlus
5.5 years ago sumonaray55 • 0
0
votes
2
replies
1.1k
views
VariantAnnotation::locateVariants error coming from XVector
variantannotation xvector iranges
5.5 years ago Vivek.b ▴ 100
2
votes
5
replies
4.6k
views
unlist doesn't work for IRanges
iranges
updated 5.5 years ago by 64k • written 5.5 years ago by ▴ 450
1
vote
2
replies
1.2k
views
Detecting Overlaps within Grange Object
r grange granges iranges
updated 5.7 years ago by 11k • written 5.7 years ago by • 0
0
votes
5
replies
1.3k
views
HiTC importC not working
HiTC IRanges windows debian
updated 5.7 years ago by ▴ 260 • written 5.7 years ago by • 0
0
votes
1
reply
1.2k
views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa iranges
updated 5.9 years ago by ▴ 290 • written 5.9 years ago by • 0
0
votes
1
reply
1.0k
views
Error in export ifelse from IRanges
iranges ifelse package namespace export
updated 5.9 years ago by 64k • written 5.9 years ago by • 0
50 results • Page 1 of 1
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Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k
You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k
If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
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If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…
Comment: ClusterProfiler - enrichKEGG on specific pathways by EvaLan • 0
Hey bekah, I wonder if you have found the solution to solve this issue? Best wishes, EvaLan
Comment: Why is DMRcate not available for Bioconductor version 3.18? by Gordon Smyth 48k
That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…
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