Showing : gcrma • reset
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RMA question + GCRMA question
GO gcrma GO gcrma
updated 22.4 years ago by ★ 2.3k • written 22.4 years ago by ▴ 720
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Bug in gcrma_0.4.0?
Microarray Cancer gcrma Microarray Cancer gcrma
22.4 years ago James W. MacDonald 68k
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gcrma question
gcrma gcrma
22.5 years ago Phguardiol@aol.com ▴ 720
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gcrma
gcrma gcrma
updated 22.5 years ago by ▴ 90 • written 22.5 years ago by ★ 1.1k
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Re: Bioconductor Digest, Vol 6, Issue
gcrma convert gcrma convert
22.5 years ago Leslie Cope ▴ 50
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using MM
affy gcrma affy gcrma
22.5 years ago Rafael A. Irizarry ★ 2.3k
406 results • Page 9 of 9
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Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
I think that some historical context will help here. Aaron Lun was a PhD student in my Lab back in 2015, and the analysis approach that he …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
You just need the mouse identifier (controls baseline) and the group specific allelic effect.
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0
Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
You may want to speak with a local statistician, because you don't just want to find the first full rank matrix and run with that if it doe…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
It is fine for your mass spec facility to include blank samples as part of their internal QC, but such samples should not in my opinion be …
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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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