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gdcquery
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reset
0
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2
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3.2k
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Workflow type=Star_counts, I want to download FPKM or TPM values, but star_counts for which?
GDCquery
2.5 years ago
yuanyuan
• 0
0
votes
0
replies
1.2k
views
TCGAbiolinks specific mutation query
TCGAbiolinks
TCGA
Mutation
GDCquery
rnaseq
5.7 years ago
Yonatan Amzaleg
• 0
0
votes
0
replies
1.5k
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Error in value[[3L]](cond) : GDC server down, try to use this package later
GDCquery
6.4 years ago
sechenmo
• 0
0
votes
0
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776
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how include slicing to manifest
gdcquery
6.6 years ago
dvortsov
• 0
1
vote
2
replies
1.8k
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TCGABiolinks::GDCquery() suddenly sending back unknown error
software error
error
tcgabiolinks
GDCquery
updated 7.1 years ago by
eshelden
▴ 40 • written 7.1 years ago by
jrlarsen
▴ 10
5 results • Page
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Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
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GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
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