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GDCquery
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2.5k
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Workflow type=Star_counts, I want to download FPKM or TPM values, but star_counts for which?
GDCquery
22 months ago
yuanyuan
• 0
0
votes
0
replies
956
views
TCGAbiolinks specific mutation query
TCGAbiolinks
TCGA
Mutation
GDCquery
rnaseq
5.1 years ago
Yonatan Amzaleg
• 0
0
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0
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1.3k
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Error in value[[3L]](cond) : GDC server down, try to use this package later
GDCquery
5.8 years ago
sechenmo
• 0
0
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647
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how include slicing to manifest
gdcquery
6.0 years ago
dvortsov
• 0
1
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2
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1.5k
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TCGABiolinks::GDCquery() suddenly sending back unknown error
software error
error
tcgabiolinks
GDCquery
updated 6.5 years ago by
eshelden
▴ 40 • written 6.5 years ago by
jrlarsen
▴ 10
5 results • Page
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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