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gene regulated
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how to perform a Differential gene expression when you don't have any reference matrix?
microarray
gene regulated
differential gene expression
9.2 years ago
Nemo
▴ 80
0
votes
6
replies
1.5k
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Inferring qualitative gene regulatory interactions from microarray data
gene regulated
regulatory network
gene interaction
updated 8.0 years ago by
Robert Castelo
★ 3.3k • written 8.2 years ago by
shaheryar
• 0
0
votes
0
replies
875
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How to convert correlation value into qualitative threshold for activation and inhibition for the construction of qualitative biological regulatory n…
gene regulated
R
qualitative network
gene analysis
8.7 years ago
shaheryar
• 0
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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