Biostar Gene regulatory networks

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CRISPR functional genomics single cell gene regulatory networks Job

21 months ago bauer ▴ 10

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Comment: CPM after RUVseq by James W. MacDonald 59k

Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…

Comment: CPM after RUVseq by James W. MacDonald 59k

You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…

Comment: CPM after RUVseq by Jess • 0

Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…

Answer: RPX PXDataset error by Laurent Gatto 1.5k

- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…

Answer: Package name already exists due to previous issue by shepherl 3.1k

This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…

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Answer: CPM after RUVseq

Comment: Merging two plated in R

Answer: Merging two plated in R

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