Bioconductor CRISPR

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CRISPR SingleCell Genomics

3.2 years ago lpinello • 0

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1.8k

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edger processamplicons sgrna crispr

updated 21 months ago by hyejo • 0 • written 6.7 years ago by Assa Yeroslaviz ★ 1.5k

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1.2k

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independentfiltering DESeq2 CRISPR

3.9 years ago • updated 3.8 years ago Rubén • 0

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2.4k

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crisprseek crispr gRNAefficacy grna

updated 4.2 years ago by Julie Zhu ★ 4.3k • written 4.3 years ago by Dawid G. Nowak ▴ 40

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CRISPR functional genomics single cell gene regulatory networks Job

4.3 years ago bauer ▴ 10

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1.2k

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Bioinformatics drug-discovery RNA-seq CRISPR Job

4.3 years ago yzhang • 0

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2.6k

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CRISPR

updated 5.2 years ago by Julie Zhu ★ 4.3k • written 5.3 years ago by sharvari gujja ▴ 40

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1.6k

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EdgeR CRISPR Barcode processamplicons

updated 6.5 years ago by sdalin • 0 • written 7.7 years ago by neggersjasper • 0

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2.5k

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crispr edger deseq deseq2

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by emanuelvgoncalves • 0

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1.5k

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R crispr fastq

8.0 years ago kfburbach • 0

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2.1k

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r crispr

updated 8.5 years ago by mousheng xu ▴ 10 • written 9.1 years ago by shane • 0

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crisprseek R CRISPR sgRNA

updated 8.8 years ago by Julie Zhu ★ 4.3k • written 8.9 years ago by alexgraehl ▴ 20

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4.6k

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crisprseek sgrna crispr cas9 R

9.2 years ago • updated 9.1 years ago alexgraehl ▴ 20

13 results • Page 1 of 1

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Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k

Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.

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Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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