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CRISPR
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353
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Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
15 months ago
lpinello
• 0
0
votes
1
reply
912
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 22 months ago by
mridulchaudhary93
• 0 • written 4.9 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
589
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
2.0 years ago • updated 24 months ago
Rubén
• 0
6
votes
14
replies
1.1k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 2.4 years ago by
Julie Zhu
★ 4.3k • written 2.4 years ago by
Dawid G. Nowak
▴ 40
1
vote
0
replies
491
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
2.5 years ago
bauer
▴ 10
0
votes
0
replies
527
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
2.5 years ago
yzhang
• 0
0
votes
19
replies
1.2k
views
Help with using CRISPRseeker
CRISPR
updated 3.4 years ago by
Julie Zhu
★ 4.3k • written 3.4 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
1.0k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 4.7 years ago by
sdalin
• 0 • written 5.9 years ago by
neggersjasper
• 0
0
votes
4
replies
1.5k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
emanuelvgoncalves
• 0
0
votes
2
replies
897
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
6.2 years ago
kfburbach
• 0
0
votes
6
replies
1.2k
views
Manipulating random CRISPR sequences
r
crispr
updated 6.7 years ago by
mousheng xu
▴ 10 • written 7.3 years ago by
shane
• 0
1
vote
1
reply
968
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 7.0 years ago by
Julie Zhu
★ 4.3k • written 7.0 years ago by
alexgraehl
▴ 20
2
votes
27
replies
2.5k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
7.3 years ago • updated 7.2 years ago
alexgraehl
▴ 20
13 results • Page
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Comment: transcript name mapping between human and mouse
by
Eric
• 0
It works very well, and thanks for such a great answer! Because I use the old version gtf from GENECODE (vM12), the id version does not mat…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Bernardo
• 0
Just did that, thank you for the suggestion.
Comment: Empty ChipQC Report
by
Okan
• 0
Hi, I have the same issue. Have you found any solution or any reason why this is happening?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…
Votes
Answer: transcript name mapping between human and mouse
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Volcano Plot in R
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
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