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glimma
•
reset
1
vote
3
replies
1.5k
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problem installing the Glimma package
glimma
6.1 years ago
omran.allatif
• 0
5
votes
4
replies
1.5k
views
Glimma Interactive plots for RNAseq
Glimma
R markdown
rnaseq
6.2 years ago
Aurora
▴ 20
7
votes
6
replies
1.4k
views
BiocStyle::html_document does not render Glimma plots
Glimma
BiocStyle
updated 21 months ago by
Mike Smith
★ 6.5k • written 22 months ago by
neilzhao
▴ 30
0
votes
0
replies
1.1k
views
Glimma: Error: Length of groups must be equal to the number of columns in counts
Glimma
RNASeq
2.4 years ago
Jonas
• 0
1
vote
2
replies
1.0k
views
bug in Glimma - anno can't have T/F
Glimma
7.9 years ago
Jenny Drnevich
★ 2.0k
2
votes
2
replies
1.0k
views
What to do when a bug is found in a BioConductor package (Glimma)
glimma
software error
updated 4.7 years ago by
Gordon Smyth
50k • written 4.7 years ago by
Sam
▴ 10
0
votes
2
replies
936
views
glimmaMA() produces blank plot if have annot column named "gene"
Glimma
updated 2.2 years ago by
Shian Su
▴ 40 • written 3.0 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
835
views
Why does the Glimma package require R >= 3.4.0 ?
glimma
updated 6.2 years ago by
Shian Su
▴ 40 • written 6.2 years ago by
gil.hornung
• 0
0
votes
0
replies
530
views
Complex design in DESeq2 doesn't seem to be supported in Glimma
limma
Glimma
RNASeq
DESeq2
2.4 years ago
Jonas
• 0
1
vote
1
reply
499
views
Extracting the tophits from limma Volcanoplot and issue with geneIDs
limma
edgeR
Glimma
updated 16 months ago by
Gordon Smyth
50k • written 16 months ago by
Mohammad
• 0
10 results • Page
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Replies
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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