Showing : glmTreat • reset
0
votes
2
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113
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replace cat with message in glmTreat when lfc = 0
edgeR glmTreat
updated 7 days ago by 53k • written 10 days ago by • 0
6
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6
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2.9k
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go DE edger rnaseq glmTreat
updated 5.4 years ago by 53k • written 5.5 years ago by ▴ 60
5
votes
5
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2.8k
views
interpreting FC values from glmTreat, especially unshrunk log-fold-changes
edgeR glmTreat significance testing
updated 5.9 years ago by ▴ 900 • written 5.9 years ago by • 0
3
votes
3
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1.6k
views
Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysis
edger differential gene expression glmtreat
updated 6.9 years ago by 53k • written 6.9 years ago by ▴ 840
0
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5
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2.0k
views
glmTreat Errors for multi coefficient and analysis of deviance situations.
edgeR glmTreat analysis of deviance
updated 7.8 years ago by ★ 7.9k • written 7.8 years ago by ▴ 80
3
votes
2
replies
1.6k
views
ROAST after edgeR glmTreat and average RPKM filter
roast edgeR glmtreat
updated 9.1 years ago by ★ 29k • written 9.1 years ago by ▴ 370
1
vote
1
reply
1.3k
views
Treat p > 1
edgeR glmTreat
updated 9.3 years ago by ▴ 900 • written 9.3 years ago by 68k
7 results • Page 1 of 1
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Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Answer: EuroBioC2023 abstract submission is open! by efuite222 • 0
Abstract submissions are now open for the #EuroBioC2023 conference in Ghent, Belgium, from September 20-22; submit by April 14 for opportu…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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