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glmTreat
•
reset
6
votes
6
replies
2.0k
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GO enrichment analysis with goana after performing DE analysis with glmTreat
go
DE
edger
rnaseq
glmTreat
updated 4.0 years ago by
Gordon Smyth
50k • written 4.0 years ago by
Raito92
▴ 60
0
votes
5
replies
1.5k
views
glmTreat Errors for multi coefficient and analysis of deviance situations.
edgeR
glmTreat
analysis of deviance
updated 6.4 years ago by
Ryan C. Thompson
★ 7.9k • written 6.4 years ago by
BharathAnanth
▴ 80
5
votes
5
replies
1.8k
views
interpreting FC values from glmTreat, especially unshrunk log-fold-changes
edgeR
glmTreat
significance testing
updated 4.4 years ago by
Yunshun Chen
▴ 840 • written 4.4 years ago by
flemi221
• 0
3
votes
3
replies
1.2k
views
Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysis
edger
differential gene expression
glmtreat
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
svlachavas
▴ 830
3
votes
2
replies
1.2k
views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
b.nota
▴ 360
1
vote
1
reply
1.0k
views
Treat p > 1
edgeR
glmTreat
updated 7.9 years ago by
Yunshun Chen
▴ 840 • written 7.9 years ago by
James W. MacDonald
65k
6 results • Page
1 of 1
Recent ...
Replies
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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James W. MacDonald
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Gordon Smyth
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