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glmgampoi
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Recommendations for DESeq2 Independent Filtering with Pseudobulk Data
DESeq2
independentfiltering
glmGamPoi
18 months ago • updated 17 months ago
Bob
▴ 30
1
vote
8
replies
2.2k
views
Advice on appropriateness of an offset in glmGamPoi/edgeR
DESeq2
glmGamPoi
offset
edgeR
scRNAseq
updated 19 months ago by
Gordon Smyth
53k • written 20 months ago by
Alec
• 0
1
vote
3
replies
1.2k
views
Dispersion estimation step is very slow with latest DESeq2 and glmGamPoi
DESeq2
glmGamPoi
24 months ago • updated 23 months ago
I-Hsuan Lin
▴ 10
8
votes
7
replies
3.3k
views
Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
DESeq2
glmGamPoi
DEXSeq
updated 2.6 years ago by
alexandresegers
▴ 20 • written 3.3 years ago by
jeremymsimon
▴ 20
1
vote
1
reply
2.7k
views
Instaling glmGamPoi
glmGamPoi
updated 3.3 years ago by
ATpoint
★ 5.0k • written 3.3 years ago by
sina.tadayon
• 0
0
votes
3
replies
2.0k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi
BiocManager
updated 3.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.3 years ago by
i.am.filippov
• 0
5
votes
4
replies
3.6k
views
Using DESeq2 with GlmGamPoi
DESeq2
glmGamPoi
scRNAseq
4.9 years ago
tatyana.perlova
• 0
7 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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