Bioconductor Glmgampoi

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DESeq2 independentfiltering glmGamPoi

13 months ago • updated 12 months ago Bob ▴ 30

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DESeq2 glmGamPoi offset edgeR scRNAseq

updated 14 months ago by Gordon Smyth 53k • written 14 months ago by Alec • 0

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DESeq2 glmGamPoi

18 months ago I-Hsuan Lin ▴ 10

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DESeq2 glmGamPoi DEXSeq

updated 2.2 years ago by alexandresegers ▴ 20 • written 2.9 years ago by jeremymsimon ▴ 20

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glmGamPoi

updated 2.8 years ago by ATpoint ★ 4.9k • written 2.8 years ago by sina.tadayon • 0

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glmGamPoi BiocManager

updated 2.8 years ago by Vincent J. Carey, Jr. 6.7k • written 2.8 years ago by i.am.filippov • 0

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DESeq2 glmGamPoi scRNAseq

4.5 years ago tatyana.perlova • 0

7 results • Page 1 of 1

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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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