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deseq2 graphs

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by Ed Siefker ▴ 230

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nem graphs rbiopaxparser

8.6 years ago Ramon Diaz-Uriarte ▴ 70

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Answer: DESeq2 interactions by swbarnes2 ★ 1.4k

The simpler way to do the first four comparisons is to make a new column in colData that is temp_pollution, and specify that column alone a…

Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

You are. The reason I pointed you to `forgeBSgenomeDataPkgFromTwobitFile` is because it's much simpler, doesn't require a seed file, and is…

Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by mat149 ▴ 80

I've tried the following, but I must be missing something: setwd("C:\\Users\\....\\wd\\dump\\seqs_srcdir") e122<-readDNA…

Comment: readBam vs read_bam_insert_metrics by rtrivedi1 ▴ 10

Thanks for the answer.

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Thank you so much for your helpful response! I have a follow-up question regarding preprocessing of the count matrix. Should steps like ge…

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Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

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