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Comment: AssignChromosomeRegion not working in Rstudio 4.2
by
Ou, Jianhong
★
1.3k
Hi Abhilansh,
Thank you for trying ChIPpeakAnno for your data. Could you please edit your post again? I am not sure I can follow your desc…
Comment: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
by
James W. MacDonald
59k
Please don't add comments onto years-old posts. Instead make a new post.
Comment: strange results from differential methylation analysis using limma
by
Sean Davis
21k
You should ask a new question, but the short answer is that features such as CpG probes are in rows.
Answer: The results(dds) function in DESeq2 gives Na values for padj
by
ATpoint
★
1.2k
Read the manual: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-are-some-p-values-set-to-na
Or …
Comment: featureCounts: 0% successfully assigned fragments
by
ATpoint
★
1.2k
Lack of any details, not appreciated. Anyway, are chromosome identifiers the same between BAM and GTF?
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