Showing : hicdcplus • reset
3
votes
7
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2.2k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+ HiCDCPlus BiocParallel
updated 3.2 years ago by • 0 • written 3.5 years ago by ▴ 10
0
votes
2
replies
303
views
Java error while running HiCDC overview code
JuicerTools HiC HiCDCPlus Java Juicer
written 5 months ago by • 0
0
votes
3
replies
848
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus HiC-DC+ HiCcompare HiC
updated 2.0 years ago by • 0 • written 3.5 years ago by • 0
0
votes
1
reply
805
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus BSgenome.Hsapiens.UCSC.hg38
updated 11 months ago by • 0 • written 17 months ago by • 0
0
votes
1
reply
463
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+ HiCDCPlus
updated 11 months ago by • 0 • written 17 months ago by • 0
0
votes
2
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1.1k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd HiCDCPlus
updated 14 months ago by • 0 • written 2.4 years ago by • 0
0
votes
1
reply
413
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 11 months ago by • 0 • written 13 months ago by • 0
0
votes
1
reply
635
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+ HiCDCPlus
updated 2.0 years ago by • 0 • written 2.8 years ago by • 0
0
votes
2
replies
665
views
Could I use HiCDCPlus in plant genome?
HiC-DC+ HiCDCPlus
updated 21 months ago by • 0 • written 2.2 years ago by • 0
0
votes
1
reply
454
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 11 months ago by • 0 • written 11 months ago by • 0
0
votes
0
replies
128
views
HiCDCPlus differential interaction error
HiCDCPlus
3 months ago Irene • 0
0
votes
1
reply
760
views
HiCDCPlus with NO replicates
hicdcdiff HiCDCPlus
updated 2.0 years ago by • 0 • written 2.3 years ago by ▴ 10
12 results • Page 1 of 1
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Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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