Bioconductor Hilbertvis

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HilbertVis ChIPseqR

updated 14 months ago by James W. MacDonald 68k • written 14 months ago by chase.mateusiak • 0

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hilbertvis rsamtools shortread biostrings

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by travis.m.couture • 0

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HilbertVis HilbertVis

updated 16.7 years ago by Simon Anders ▴ 150 • written 16.7 years ago by Tobias Straub ▴ 430

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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