Showing : hpc • reset
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Job: Postdoc+PhD position: AI large-language models of single-cell data for cancer immunogenomics
JobPosting AI HPC CuratedAtlasQueryR
8 months ago Stefano Mangiola ▴ 20
5
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25
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1.9k
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limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 10 months ago by 52k • written 10 months ago by ▴ 10
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543
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Fatal error: Wrong thread calling 'RunFinalizers'
featureCount Rsubread HPC
17 months ago kthapa • 0
4
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8
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3.2k
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R package installation error
HPC R Bioconducter
2.9 years ago Jitendra ▴ 10
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655
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Profiling bioconductor packages in a straightforward fashion
HPC profiling performance
3.3 years ago Jack • 0
2
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2
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1.7k
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Problem installing Minfi on Cluster
Minfi local installation Centos hpc
updated 6.8 years ago by ★ 6.5k • written 6.8 years ago by • 0
6 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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Teacher to James W. MacDonald 68k
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