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Comment: ROC plot for OPLS-DA
by
etienne.thevenot
▴
20
I would suggest to concatenate your training and testing data rowwise, and to apply the `opls` method with the subset parameter to select t…
Comment: regression analysis for epic array methylation data using limma
by
nabiyogesh
▴
10
Dear Basti, thank you so much!
Could you please also help me how to arrange samples in the same order in rows (targests2) and columns in (…
Comment: How to figure out the FC value from Limma
by
ATpoint
★
1.2k
You probably have opened that file in Excel before. Get it again directly from GEO2R, or even better take the R script GEO2R offers and run…
Comment: regression analysis for epic array methylation data using limma
by
Basti
▴
280
The columns of your design matrix `var` corresponds to the coefficients that are fitted by limma. If you check your design matrix, you will…
Comment: How to figure out the FC value from Limma
by
beslinail
•
0
I tried to FC column to dbl from chr. But FC colomn is changed by NA
genlist_filter <- read_csv(file = "AD_control5.csv")
gen…
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