Bioconductor Intron

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 10 months ago by ATpoint ★ 4.0k • written 10 months ago by Lillian • 0

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deseq2 intron differential expression

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by gv ▴ 40

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deseq2 intron

updated 5.6 years ago by Malcolm Cook ★ 1.6k • written 5.6 years ago by Mthabisi Moyo ▴ 30

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intron GenomicFeatures

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.4 years ago by leonardsquall15 ▴ 10

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Comment: DESeq2 setting significant p-value by Michael Love 41k

It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.

Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

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Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

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