Showing : iranges • reset
0
votes
3
replies
1.4k
views
IRanges::rbind with names stopped working
IRanges IRanges
updated 15.8 years ago by ★ 11k • written 15.8 years ago by ★ 3.4k
0
votes
0
replies
980
views
unexpected result of rep(Rle(), times=<vector or Rle>)
IRanges IRanges
15.8 years ago Patrick Aboyoun ★ 1.6k
0
votes
1
reply
964
views
bug in IRanges::disjoin and strange behavior of c
IRanges IRanges
updated 15.8 years ago by ★ 11k • written 15.8 years ago by ★ 6.5k
0
votes
8
replies
1.8k
views
stranded findOverlaps
IRanges IRanges
updated 15.8 years ago by ▴ 50 • written 15.8 years ago by ★ 3.4k
0
votes
4
replies
1.3k
views
findOveraps suggestions
Cancer IRanges Cancer IRanges
updated 15.8 years ago by ★ 11k • written 15.8 years ago by ▴ 740
0
votes
0
replies
936
views
[Bioc-devel] BSgenome error
GO BSgenome BSgenome IRanges ChIPpeakAnno GO BSgenome BSgenome IRanges ChIPpeakAnno
15.9 years ago Tony Chiang ▴ 570
0
votes
1
reply
1.2k
views
TSS Regions
Transcription IRanges Transcription IRanges
updated 15.9 years ago by ★ 4.3k • written 15.9 years ago by ▴ 130
0
votes
5
replies
1.7k
views
IRanges causes bug in complete.cases
Regression IRanges Regression IRanges
updated 15.9 years ago by ★ 11k • written 15.9 years ago by ★ 6.5k
0
votes
1
reply
1.4k
views
Please Help with rMAT: NAs in Enrich Object
Normalization Preprocessing rtracklayer IRanges rMAT Normalization Preprocessing IRanges
updated 15.9 years ago by 25k • written 15.9 years ago by ▴ 410
0
votes
2
replies
1.4k
views
IRanges:::coverage() speedup/enchancement
Coverage IRanges Coverage IRanges
updated 15.9 years ago by ▴ 290 • written 15.9 years ago by ★ 1.6k
0
votes
1
reply
1.1k
views
IRanges:::coverage() speedup/enchancement
Coverage IRanges Coverage IRanges
updated 15.9 years ago by ▴ 620 • written 15.9 years ago by ▴ 290
0
votes
1
reply
951
views
(no subject)
rtracklayer IRanges rtracklayer IRanges
updated 16.1 years ago by ★ 1.6k • written 16.1 years ago by ▴ 450
0
votes
5
replies
1.7k
views
IRanges : Strange behavior subsetting an IntervalTree with an indexing variable from within a function
Cancer IRanges Cancer IRanges
16.2 years ago Steve Lianoglou ★ 13k
0
votes
6
replies
2.1k
views
Merging RandData object with names on the IRanges part
IRanges IRanges
16.2 years ago Ulrike Goebel ▴ 110
0
votes
2
replies
1.1k
views
"unexpected" result from IRanges::intersect
Cancer IRanges Cancer IRanges
updated 16.2 years ago by ★ 1.6k • written 16.2 years ago by ★ 13k
0
votes
0
replies
5.8k
views
Reading GFF files into R and GenomeGraphs
Coverage Annotation Visualization convert GLAD GenomeGraphs rtracklayer IRanges Coverage
16.2 years ago Michael Dondrup ▴ 140
0
votes
1
reply
1.1k
views
no 'strands' method on GenomicData in 2.5?
hgu133plus2 rtracklayer IRanges hgu133plus2 rtracklayer IRanges
updated 16.3 years ago by ▴ 620 • written 16.3 years ago by ★ 1.1k
0
votes
0
replies
857
views
IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work
IRanges IRanges
16.4 years ago Paul Shannon ★ 1.1k
0
votes
2
replies
1.6k
views
interoperability between IRanges/ShortRead and rtracklayer
Coverage rtracklayer IRanges Coverage rtracklayer IRanges
updated 16.4 years ago by ★ 1.6k • written 16.4 years ago by ▴ 150
0
votes
1
reply
1.0k
views
Compilation or syntax error in IRanges sort_util.c package
Biostrings IRanges Biostrings IRanges
updated 16.6 years ago by 16k • written 16.6 years ago by ▴ 20
0
votes
1
reply
972
views
IRange, license and warnings
IRanges IRanges
updated 16.6 years ago by ▴ 620 • written 16.6 years ago by ▴ 120
0
votes
3
replies
1.4k
views
IRanges: find containment and not just overlap
IRanges IRanges
updated 16.7 years ago by ▴ 620 • written 16.7 years ago by ▴ 210
0
votes
0
replies
2.0k
views
getSeq human genomic sequences
Annotation Cancer BSgenome PROcess GLAD BSgenome IRanges Annotation Cancer BSgenome GLAD
16.8 years ago Hervé Pagès 16k
0
votes
2
replies
1.2k
views
Adding names to a IRanges object
Cancer IRanges Cancer IRanges
updated 16.8 years ago by ▴ 620 • written 16.8 years ago by ★ 1.9k
0
votes
6
replies
1.9k
views
IRanges: Trying to cut overlapping intervals into pieces
IRanges IRanges
updated 16.8 years ago by ▴ 620 • written 16.8 years ago by ▴ 210
275 results • Page 6 of 6
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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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