Biostar Isee

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iSEE

updated 2.2 years ago by kevin.rue ▴ 320 • written 2.2 years ago by jma1991 ▴ 70

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Network GeneNetwork iSEE

updated 2.4 years ago by Aaron Lun ★ 28k • written 2.4 years ago by Frank • 0

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iSEE SummarizedExperiment

updated 2.9 years ago by Aaron Lun ★ 28k • written 2.9 years ago by rishi.dasroy ▴ 20

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iSEE shiny summarizedExperiment News

4.0 years ago Aaron Lun ★ 28k

4 results • Page 1 of 1

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Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

That's great. Thank you for clarifying the confusion. Cheers,

Comment: minfi support of illumina Infinium methylationEPIC v2.0 by luca.s ▴ 40

Tank you James. All fine, but for preprocessIllumina, which apparently won't work

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

As an exercise I've tried to analyze simpler but similar experiment. The data is from real experiment (E-MTAB-11224) comparing wild type an…

Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…

Comment: Definition of disease_subtype abbreviations by Lucas Schiffer ▴ 240

Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…

Votes

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Are polynomial contrasts for a time factor possible in DESeq2?

Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

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Scholar to Gordon Smyth 47k

Popular Question to Robert Castelo ★ 3.0k