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isee
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How to set aspect ratio and symmetric colour map in iSEE panels?
iSEE
updated 3.3 years ago by
kevin.rue
▴ 350 • written 3.3 years ago by
jma1991
▴ 70
4
votes
2
replies
1.1k
views
iSEE - Custom Panel
Network
GeneNetwork
iSEE
updated 3.5 years ago by
Aaron Lun
★ 28k • written 3.5 years ago by
Frank
• 0
5
votes
7
replies
1.3k
views
featAssayPlotDefaults does not work for SummarizedExperiment object
iSEE
SummarizedExperiment
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
rishi.dasroy
▴ 20
6
votes
0
replies
1.3k
views
News:
Winners of the 1st Shiny Contest: iSEE
iSEE
shiny
summarizedExperiment
News
5.1 years ago
Aaron Lun
★ 28k
4 results • Page
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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