Bioconductor Kegggraph

Showing : kegggraph • reset

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465

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igraph KEGGgraph RCy3 GraphNEL

5 months ago • updated 4 months ago Arindam ▴ 80

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781

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KEGGgraph KEGG

updated 8 months ago by Guido Hooiveld ★ 4.1k • written 8 months ago by Fara • 0

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432

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 9 months ago by James W. MacDonald 68k • written 9 months ago by fernanda.backsouza ▴ 30

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595

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 9 months ago by Guido Hooiveld ★ 4.1k • written 10 months ago by fernanda.backsouza ▴ 30

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539

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enrichKEGG KEGGgraph KEGG

updated 12 months ago by Guido Hooiveld ★ 4.1k • written 12 months ago by cinzia.spagnoli • 0

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Comment: Overcoming confounding in batch effect correction by Dario Strbenac ★ 1.6k

Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…

Comment: Overcoming confounding in batch effect correction by ATpoint ★ 4.7k

biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here. [1]: https://www.reddi…

Comment: Overcoming confounding in batch effect correction by bbao ▴ 10

Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?

Comment: For some reason I can't update BiocManager to 3.20 by shepherl 4.1k

interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…

Comment: Overcoming confounding in batch effect correction by ATpoint ★ 4.7k

Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…

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Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

Comment: Overcoming confounding in batch effect correction

Overcoming confounding in batch effect correction

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Teacher to James W. MacDonald 68k