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DEXSeq: How to reduce compute time for estimating dispersions for large datasets.
dexseq
estimatedispersions
large dataset
3.6 years ago
mjrarcher
▴ 10
4
votes
4
replies
2.0k
views
Why does DEseq2 take a long time to run on large dataset ?
DEseq2
large dataset
updated 3.8 years ago by
Michael Love
37k • written 3.8 years ago by
mathias.saver
▴ 10
5
votes
4
replies
837
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Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
4.3 years ago
slinker
▴ 20
3 results • Page
1 of 1
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Comment: How should I set my eps value in cluster profiler?
by
Guido Hooiveld
★ 3.3k
Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
Comment: Error using ChAMP SVD analysis
by
CristEin
• 0
In fact, I found that the author may have caused the problem class(myNorm) %>% length() #equals 2 class(myNorm) == "data.…
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
Oh sorry I missed the species. Yes they also match for chicken :-) (both being called "ENSGALT..."). The other is from NCBI
Comment: Error in Create switchAnalyzeRlist
by
bpshtiwan
▴ 10
Ok, have you looked cDNA fasta file for Chicken (maternal Broiler) Gallus gallus? I am using Kallisto for alignment and quantification. He…
Comment: DEXseq error unable to find an inherited method for function NSBS for signature
by
ta_awwad
▴ 10
Hi there, did you manage to solve this problem? thanks TA
Votes
DEXseq error unable to find an inherited method for function NSBS for signature CompressedIntegerList
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
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