Bioconductor Leukemia

Showing : leukemia • reset

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bioinformatician job ngs leukemia cancer Job

7.9 years ago Hui Sun Leong ▴ 10

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Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV

11.5 years ago SSc Array Core ▴ 10

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Genetics Cancer Leukemia Genetics Cancer Leukemia

11.6 years ago RNDr. Martin Pospíšek, Ph.D. ▴ 10

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Transcription Pathways Leukemia graphite Transcription Pathways Leukemia graphite

11.9 years ago Hamid Bolouri ▴ 90

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Transcription Microarray Cancer Leukemia Transcription Microarray Cancer Leukemia

12.4 years ago Johannes Rainer ▴ 80

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Normalization Leukemia Lung hu6800 affy Normalization Leukemia Lung hu6800 affy

13.1 years ago Juliet Hannah ▴ 360

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Microarray GO Leukemia Microarray GO Leukemia

updated 13.5 years ago by Steve Lianoglou ★ 13k • written 13.5 years ago by Pradeep Battula ▴ 100

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Microarray GO Leukemia Microarray GO Leukemia

13.5 years ago Pradeep Battula ▴ 100

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Microarray GO Cancer Leukemia Microarray GO Cancer Leukemia

15.2 years ago Johannes Rainer ▴ 80

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Leukemia Leukemia

17.5 years ago Lewin Eisele ▴ 20

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Leukemia Leukemia

updated 17.6 years ago by Nianhua Li ▴ 870 • written 17.6 years ago by Shi, Tao ▴ 720

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Microarray Normalization Leukemia Microarray Normalization Leukemia

18.7 years ago Arne.Muller@sanofi-aventis.com ▴ 210

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Bayesian Clustering Leukemia affy PROcess DOSE Bayesian Clustering Leukemia affy PROcess

21.1 years ago Phguardiol@aol.com ▴ 720

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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Votes

C: when to apply quantile normalization with voom in limma/voom framework with RNA-

A: How to know if I should use voomWithQualityWeights() or not?

A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom

Answer: Log-cpm values from limma

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