Bioconductor Limmagui

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Normalization limmaGUI Normalization limmaGUI

updated 22.0 years ago by Gordon Smyth 53k • written 22.0 years ago by ying chen ▴ 40

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limmaGUI limmaGUI

updated 22.0 years ago by Marcelo Luiz de Laia ▴ 770 • written 22.0 years ago by James Wettenhall ▴ 1000

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limmaGUI limmaGUI

updated 22.0 years ago by A.J. Rossini ▴ 810 • written 22.0 years ago by Marcelo Luiz de Laia ▴ 770

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limmaGUI limmaGUI

updated 22.0 years ago by Gordon Smyth 53k • written 22.0 years ago by Peter Baker CMIS, Indooroopilly ▴ 80

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limma limmaGUI limma limmaGUI

updated 22.1 years ago by Dave Waddell ▴ 160 • written 22.1 years ago by James Wettenhall ▴ 1000

105 results • Page 3 of 3

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Comment: JunctionSeq producing strangely large effect sizes for certain exon counting bin by 97shandie • 0

That's a tricky issue! I've definitely seen similar behavior in differential exon usage analysis. It sounds like the normalization method J…

Comment: Heat Map by 97shandie • 0

Hi Dania, it looks like you're on the right track building your heatmap! It's great you've already filtered your data based on adjusted p-v…

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Results with PON give more variants by ejafgdf4.ge.r.m • 0

It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Comment: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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Popular Question to James W. MacDonald 68k