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Comment: Why does DESeq2 give negative log2 fold change in treatment vs control for some
by
sropri
• 0
That makes sense. I am running iterations without any confounders, and with confounders to see how much of an effect each has. Appreciate y…
Comment: Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connec
by
Svitlana
• 0
Thank you so much! The issue has been resolved.
Answer: BiomaRt listAttributes - which are external ?
by
James W. MacDonald
66k
Mike Smith will probably be along in a while with actual information, but in the interim do note that you can cross-reference using the onl…
Comment: SeSAMe DMR for EPIC V2
by
luca.s
▴ 50
Thank you, that was indeed the case. I fed the function with the data containing the replicate probes collapsed by mean and this caused the…
Comment: SeSAMe DMR for EPIC V2
by
zhouwanding
▴ 20
Update: The new 1.23.8 should have fixed this issue. Let me know if it still doesn't.
Votes
Answer: SeSAMe DMR for EPIC V2
A: DESeq2: Is it necessary to include all terms and interactions in LRT tests?
A: Unable to download "BSgenome.Hsapiens.UCSC.hg19" package using R 3.6.3 on Window
Unable to download "BSgenome.Hsapiens.UCSC.hg19" package using R 3.6.3 on Windows 10 x64
Comment: EnsDb: bad_weak_ptr
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