Bioconductor Linear mixed model

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linear mixed model edger limma voom RNA-seq

updated 5.4 years ago by Gordon Smyth 53k • written 5.4 years ago by weichengz ▴ 10

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limma linear mixed model voom rna-seq

6.2 years ago Assa Yeroslaviz ★ 1.5k

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Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k

You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…

Comment: Using DESeq2 for age prediction by picasa1983 • 0

Thanks ! Do you have any idea how to do that ?

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

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A: Multi-level experiments in Limma

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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