Bioconductor Load

Showing : load • reset

0

votes

1

reply

524

views

DESeq2 load

updated 13 months ago by Michael Love 41k • written 14 months ago by Naomi • 0

3

votes

3

replies

1.5k

views

MotifDb library load

updated 7.1 years ago by Paul Shannon ▴ 470 • written 7.2 years ago by Pengcheng Yang ▴ 60

2 results • Page 1 of 1

Recent ...

Replies

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

Answer: fgsea significant result by ATpoint ★ 4.1k

Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…

Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Votes

Answer: CombineArrays for EPIC and EPIC V2

Awards • All