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lpe
•
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0
votes
7
replies
1.7k
views
Statistical comparison of low replicate affy data
affy
gcrma
siggenes
LPE
affy
gcrma
siggenes
LPE
20.2 years ago
Matthew Hannah
▴ 940
0
votes
3
replies
2.6k
views
Inherits(x,"data.frame") error in SamR
Microarray
Normalization
Preprocessing
Bayesian
Clustering
TimeCourse
Cancer
affy
vsn
LPE
18.2 years ago
McGee, Monnie
▴ 300
0
votes
1
reply
1.0k
views
LPE errors
LPE
LPE
updated 19.4 years ago by
Jain, Nitin
▴ 70 • written 19.4 years ago by
Stephanie Mewborn
▴ 40
0
votes
1
reply
962
views
Limma or something else ? plus Normalization question
limma
LPE
PROcess
limma
LPE
PROcess
updated 20.6 years ago by
Gordon Smyth
50k • written 20.6 years ago by
Phguardiol@aol.com
▴ 720
0
votes
1
reply
1.1k
views
Help with LPE error message
LPE
LPE
updated 19.2 years ago by
Jain, Nitin
▴ 70 • written 19.2 years ago by
Puhong Gao
▴ 140
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
15.5 years ago
Patrick Aboyoun
★ 1.6k
0
votes
2
replies
1.1k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer
gcrma
LPE
Cancer
gcrma
LPE
updated 15.5 years ago by
Patrick Aboyoun
★ 1.6k • written 15.5 years ago by
Charlie Whittaker
▴ 70
0
votes
18
replies
2.3k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer
gcrma
LPE
affylmGUI
Cancer
gcrma
LPE
affylmGUI
updated 15.5 years ago by
Charlie Whittaker
▴ 70 • written 15.5 years ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
983
views
FDR adjustment in LPE
LPE
LPE
updated 19.0 years ago by
Jain, Nitin
▴ 70 • written 19.0 years ago by
jean-louis.ruelle@gskbio.com
▴ 40
0
votes
1
reply
947
views
local pooled error
LPE
LPE
updated 19.1 years ago by
A.J. Rossini
▴ 210 • written 19.1 years ago by
Lana Schaffer
★ 1.3k
0
votes
1
reply
1.2k
views
problem with LPE
LPE
LPE
updated 20.2 years ago by
Nitin Jain
▴ 30 • written 20.2 years ago by
Phguardiol@aol.com
▴ 720
0
votes
0
replies
906
views
PLPE error
Microarray
affy
LPE
PLPE
Microarray
affy
LPE
PLPE
15.3 years ago
Dennis.Burian@faa.gov
▴ 90
0
votes
0
replies
906
views
question about RMA and filtering
affy
LPE
affy
LPE
20.8 years ago
Phguardiol@aol.com
▴ 720
0
votes
0
replies
948
views
Limma or something else ? plus Normalization question
Normalization
affy
limma
LPE
PROcess
Normalization
affy
limma
LPE
PROcess
20.6 years ago
Gordon Smyth
50k
0
votes
0
replies
815
views
LPE
cdf
affy
LPE
ASSIGN
cdf
affy
LPE
ASSIGN
19.2 years ago
Harry Hurd
▴ 60
0
votes
0
replies
846
views
LPE
cdf
affy
LPE
ASSIGN
cdf
affy
LPE
ASSIGN
19.2 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
830
views
pools and tech rep
limma
LPE
limma
LPE
18.9 years ago
Ariel Chernomoretz
▴ 380
0
votes
0
replies
860
views
LPE method based on RMA vs. MAS5
Preprocessing
LPE
Preprocessing
LPE
18.7 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
878
views
incoherence with LPE
LPE
LPE
18.7 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
852
views
LPE question
LPE
LPE
18.2 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
769
views
A friendly mention of LPE package
LPE
LPE
16.2 years ago
pingzhao Hu
▴ 210
0
votes
0
replies
1.0k
views
LPE error and warnings
LPE
LPE
19.5 years ago
Stephanie Mewborn
▴ 40
22 results • Page
1 of 1
Recent ...
Replies
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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