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mageckflute
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MAGeCKFlute - Installation
MAGeCKFlute
5.2 years ago
royce.wilkinson
• 0
1
vote
2
replies
693
views
mageckflute can't output my own data but the model data
MAGeCKFlute
updated 4.5 years ago by
Martin Morgan
25k • written 4.5 years ago by
pamelalee
• 0
0
votes
0
replies
591
views
MAGECK MLE design matrix
mageck
MAGeCKFlute
10 months ago
Monika
• 0
0
votes
0
replies
581
views
Should MAGeCKFlute CellCycle Normalization make beta scores more extreme?
MAGeCKFlute
3.7 years ago
Solarion
• 0
0
votes
0
replies
411
views
Positive beta-scores of essential genes in drug-treated cells
mageck
MAGeCKFlute
CrisprScreen
10 months ago
Monika
• 0
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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