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Answer: Epicv2 conversion fail
by
James W. MacDonald
66k
In the double conversion, the output you supplied indicates that the number of probes is the same (453093)? The EPICv2 is only partially…
Answer: PCA (Principal Component Analysis) plots from ChIP-seq data
by
ATpoint
★ 4.2k
Not specific for the tagged package, but generally: PCA is performed on a matrix of counts, typically normalized for library size and co…
Answer: Cannot connect to annotationhub server
by
shepherl
3.9k
Do you have a strong internet connect and/or are you behind a proxy ?
Answer: DESeq2 ML Query
by
Michael Love
42k
> What count matrix/file from tximport or DESeq2 would be advised for an ML classifier. The emphasis is on a parsimonous set of genes, that…
Comment: Test of Multiple Linear Combination on coefficients from Wald Test in Deseq2
by
James W. MacDonald
66k
Oh, and I don't understand your second question. If you set a contrast vector to be all zeros (which I think is what you are asking), then …
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Answer: How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable fo
Answer: Otsu threshold segmentation using EBImage
A: Limma Voom produces many identical adjusted p-values
Limma Voom produces many identical adjusted p-values
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
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