Bioconductor Matrixeqtl

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matrixeqtl sva

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Shila • 0

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MatrixEQTL

updated 2.3 years ago by Michael Love 42k • written 2.3 years ago by Neha • 0

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hg19 liftover matrixeqtl DMRcate

updated 5.0 years ago by James W. MacDonald 65k • written 5.0 years ago by yoursbassanio ▴ 10

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Comment: Create protein sequences including variants from a VCF file by Yun • 0

This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object

Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0

Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Guido Hooiveld ★ 4.0k

FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…

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Comment: How to correctly adjust for gender in edgeR

A: DEXSeq design formula

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