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hg19
•
reset
2
votes
2
replies
262
views
Get gene symbols for a set of hg19 coordinates
annotation
hg19
9 weeks ago
pcantalupo
▴ 10
2
votes
3
replies
1.9k
views
Error "cannot map the following UCSC seqlevel(s) to an NCBI seqlevel" in package GenomeDbInfo
genomeinfodb
hg19
ucsc
seqlevel
genomicfeatures
updated 4.3 years ago by
James W. MacDonald
66k • written 4.3 years ago by
foehn
▴ 100
1
vote
3
replies
1.3k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 5.2 years ago by
James W. MacDonald
66k • written 5.2 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.0k
views
Identifying long stretches of Ns in hg19
bsgenome.hsapiens.ucsc.hg19
hg19
updated 6.7 years ago by
Mike Smith
★ 6.5k • written 6.7 years ago by
addyS
• 0
0
votes
0
replies
1.3k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.2 years ago
matthew.bashton
• 0
1
vote
4
replies
2.8k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 7.4 years ago by
maximilianh
▴ 10 • written 7.4 years ago by
metamaden
▴ 10
2
votes
4
replies
1.3k
views
BiomaRT inconsistency for PDGFRA, returns FIP1L1 instead
biomart
hg19
7.8 years ago
Stephane Plaisance | VIB |
▴ 60
0
votes
1
reply
1.3k
views
BSgenome.Hsapiens.UCSC.hg19 Sequence missing
bsgenome
hg19
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
Lakshmanan Iyer
▴ 250
8 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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to
maltethodberg
▴ 180
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to
Michael Love
42k
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to
Leonardo Collado Torres
★ 1.1k
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to
Gordon Smyth
51k
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