Bioconductor Liftover

Showing : liftover • reset

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889

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liftOver SNP GWASTools

2.2 years ago bonheur • 0

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2.4k

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lifto liftOver

updated 3.0 years ago by Marcel Ramos 700 • written 3.0 years ago by james.dalgleish • 0

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2.3k

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liftOver rtracklayer

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by Mikhail Dozmorov ▴ 30

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2.1k

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liftOver

updated 4.5 years ago by shepherl 4.1k • written 4.5 years ago by bluepebbles • 0

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1.2k

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liftOver

4.5 years ago geneprophet • 0

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1.6k

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hg19 liftover matrixeqtl DMRcate

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by yoursbassanio ▴ 10

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1.5k

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rtracklayer export.bw liftover

updated 6.5 years ago by Michael Lawrence ★ 11k • written 6.5 years ago by ang ▴ 20

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1.5k

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rtracklayer liftOver parameters minMatch

updated 7.1 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by Nik dAK ▴ 10

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3.6k

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rtracklayer liftover bioconductor R

updated 7.8 years ago by Michael Lawrence ★ 11k • written 7.8 years ago by m.guelfi • 0

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2.1k

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liftover rtracklayer

updated 7.8 years ago by Michael Lawrence ★ 11k • written 7.8 years ago by beausoleilmo • 0

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2.7k

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software error liftOver workflowinstall package installation

updated 8.6 years ago by James W. MacDonald 68k • written 8.6 years ago by JustGettinStarted • 0

11 results • Page 1 of 1

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Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

Votes

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

Awards • All

Scholar to James W. MacDonald 68k